Bioschemas for lifesciences Community Group - Activity in 2020
No matches.
GitHub
BioSchemas/bioschemas.github.io
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7 pull requests opened.
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Add Chris Child BioSchemas/bioschemas.github.io#351, by @AlasdairGray.
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Study 0.2 draft BioSchemas/bioschemas.github.io#350, by @AlasdairGray.
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bio.tools live deploy BioSchemas/bioschemas.github.io#349, by @albangaignard.
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Update scholarly profiles BioSchemas/bioschemas.github.io#348, by @ljgarcia.
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Update time and date of community call BioSchemas/bioschemas.github.io#347, by @AlasdairGray.
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Update profile property ranges as per schema.org latest version (training and labprotocol profiles only) BioSchemas/bioschemas.github.io#346, by @ljgarcia.
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Remove banner for steering council applications BioSchemas/bioschemas.github.io#345, by @AlasdairGray.
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6 pull requests merged.
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bio.tools live deploy BioSchemas/bioschemas.github.io#349.
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Update scholarly profiles BioSchemas/bioschemas.github.io#348.
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Update profile property ranges as per schema.org latest version (training and labprotocol profiles only) BioSchemas/bioschemas.github.io#346.
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Update time and date of community call BioSchemas/bioschemas.github.io#347.
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Add TDWG talk by Franck BioSchemas/bioschemas.github.io#344.
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Remove banner for steering council applications BioSchemas/bioschemas.github.io#345.
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6 pull requests received 27 new comments.
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Update profile property ranges as per schema.org latest version (training and labprotocol profiles only) BioSchemas/bioschemas.github.io#346 (3 comments by @AlasdairGray, @ljgarcia)
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Release 1.0 of ComputationalWorkflow and FormalParameter BioSchemas/bioschemas.github.io#335 (2 comments by @alaninmcr, @AlasdairGray)
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bio.tools live deploy BioSchemas/bioschemas.github.io#349 (2 comments by @albangaignard, @matuskalas)
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Update scholarly profiles BioSchemas/bioschemas.github.io#348 (2 comments by @AlasdairGray, @ljgarcia)
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Add use cases for scholarly publications profiles BioSchemas/bioschemas.github.io#265 (2 comments by @AlasdairGray, @ljgarcia)
BioSchemas/specifications
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5 issues opened.
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MIAPPE/Bioschemas alignment for Plant Studies BioSchemas/specifications#478, by @AlasdairGray.
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Link Dataset to Study: proposal to use `isBasedOn` BioSchemas/specifications#477, by @AlasdairGray.
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Challenges of consuming with DataRecord, do we need it? BioSchemas/specifications#475, by @AlasdairGray.
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Update DataCatalog profile to Schema.org version 10.0 BioSchemas/specifications#474, by @AlasdairGray.
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Update Dataset profile to Schema.org 10.0 BioSchemas/specifications#473, by @AlasdairGray.
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3 issues closed.
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Dataset distribution BioSchemas/specifications#79.
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Dataset keywords example is array rather than text BioSchemas/specifications#451.
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Scholarly Publication Use Cases BioSchemas/specifications#379.
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8 issues received 10 new comments.
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Review MassBank markup and add to LiveDeploys BioSchemas/specifications#198 (3 comments by @AlasdairGray, @meier-rene, @sneumann)
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MIAPPE/Bioschemas alignment for Plant Studies BioSchemas/specifications#478 (1 comment by @AlasdairGray)
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How to link a Study with the Project and Dataset? BioSchemas/specifications#472 (1 comment by @AlasdairGray)
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Dataset keywords example is array rather than text BioSchemas/specifications#451 (1 comment by @AlasdairGray)
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SemanticAnnotation: ScholarlyPublication or ScholarlyArticle BioSchemas/specifications#322 (1 comment by @ljgarcia)
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Challenges of consuming with DataRecord, do we need it? BioSchemas/specifications#475 (1 comment by @JervenBolleman)
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1 pull request opened.
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Add examples 0.2-DRAFT for publication profiles BioSchemas/specifications#476, by @ljgarcia.
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1 pull request merged.
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Add examples 0.2-DRAFT for publication profiles BioSchemas/specifications#476.
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GitHub
BioSchemas/bioschemas.github.io
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7 pull requests opened.
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Add TDWG talk by Franck BioSchemas/bioschemas.github.io#344, by @AlasdairGray.
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Fix Issue 457: various improvements to the display of a type BioSchemas/bioschemas.github.io#343, by @AlasdairGray.
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Added mention of ELIXIR scientific programme BioSchemas/bioschemas.github.io#342, by @AlasdairGray.
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Publish ComputationalTools 0.5-DRAFT BioSchemas/bioschemas.github.io#341, by @AlasdairGray.
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Adding details of known sitemaps BioSchemas/bioschemas.github.io#340, by @AlasdairGray.
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Update Training Group Leads BioSchemas/bioschemas.github.io#339, by @AlasdairGray.
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Change deadline date for steering council applications BioSchemas/bioschemas.github.io#338, by @AlasdairGray.
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7 pull requests merged.
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Fix Issue 457: various improvements to the display of a type BioSchemas/bioschemas.github.io#343.
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Champions page BioSchemas/bioschemas.github.io#333.
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Add details of where Bioschemas has been recommended for use BioSchemas/bioschemas.github.io#332.
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Publish ComputationalTools 0.5-DRAFT BioSchemas/bioschemas.github.io#341.
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Update Training Group Leads BioSchemas/bioschemas.github.io#339.
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Adding details of known sitemaps BioSchemas/bioschemas.github.io#340.
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Change deadline date for steering council applications BioSchemas/bioschemas.github.io#338.
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4 pull requests received 14 new comments.
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Publish ComputationalTools 0.5-DRAFT BioSchemas/bioschemas.github.io#341 (7 comments by @alaninmcr, @AlasdairGray, @ljgarcia)
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Fix Issue 457: various improvements to the display of a type BioSchemas/bioschemas.github.io#343 (3 comments by @AlasdairGray, @ljgarcia)
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Adding details of known sitemaps BioSchemas/bioschemas.github.io#340 (3 comments by @AlasdairGray, @danbri, @petrospaps)
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Release 1.0 of ComputationalWorkflow and FormalParameter BioSchemas/bioschemas.github.io#335 (1 comment by @AlasdairGray)
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BioSchemas/specifications
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16 issues opened.
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How to link a Study with the Project and Dataset? BioSchemas/specifications#472, by @AlasdairGray.
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How to make the distinction between multiple input / output parameters sharing the same "type" (EDAM data class) ? BioSchemas/specifications#471, by @albangaignard.
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Extend Protein Profile to include link to SequenceAnnotation BioSchemas/specifications#469, by @AlasdairGray.
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Create SequenceAnnotation profile BioSchemas/specifications#468, by @AlasdairGray.
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ToDos remaining in ComputationalTool 0.5-DRAFT BioSchemas/specifications#467, by @AlasdairGray.
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ComputationalTool 0.5-DRAFT uses properties outside of schema.org BioSchemas/specifications#466, by @AlasdairGray.
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Is MediaObject the appropriate type for the input and output of a ComputationalTool? BioSchemas/specifications#465, by @AlasdairGray.
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[FormalParameter Profile] use of the potentialAction property BioSchemas/specifications#464, by @albangaignard.
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FormalParameter Type annotated with domain-specific ontologies BioSchemas/specifications#463, by @albangaignard.
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Usage of hasPart to describe workflow steps ? BioSchemas/specifications#462, by @albangaignard.
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[ComputationalWorkflow profile] mandatory sdPublisher property BioSchemas/specifications#461, by @albangaignard.
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Workflow semantic annotations with external ontologies BioSchemas/specifications#460, by @albangaignard.
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Give JSON-LD example in the headers of profile pages BioSchemas/specifications#459, by @albangaignard.
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[ComputationalWorkflow Type and Profile] sentence for description BioSchemas/specifications#458, by @albangaignard.
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Improvements to Types Template BioSchemas/specifications#457, by @AlasdairGray.
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Review/comments of Workflow specifications BioSchemas/specifications#456, by @dgarijo.
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2 issues closed.
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FormalParameter fields BioSchemas/specifications#452.
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Improvements to Types Template BioSchemas/specifications#457.
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8 issues received 18 new comments.
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Review/comments of Workflow specifications BioSchemas/specifications#456 (6 comments by @alaninmcr, @AlasdairGray)
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Is MediaObject the appropriate type for the input and output of a ComputationalTool? BioSchemas/specifications#465 (2 comments by @albangaignard, @matuskalas)
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How to make the distinction between multiple input / output parameters sharing the same "type" (EDAM data class) ? BioSchemas/specifications#471 (1 comment by @matuskalas)
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Give JSON-LD example in the headers of profile pages BioSchemas/specifications#459 (1 comment by @AlasdairGray)
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Revision bioschemas/Tools vs spreadsheet 0.5 DRAFT BioSchemas/specifications#454 (1 comment by @AlasdairGray)
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1 pull request opened.
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Create MIAPPE_Dataset_Study.jsonld BioSchemas/specifications#470, by @cpommier.
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2 pull requests merged.
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Create MIAPPE_Dataset_Study.jsonld BioSchemas/specifications#470.
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Measurement type BioSchemas/specifications#432.
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1 pull request received 1 new comment.
GitHub
BioSchemas/specifications
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5 issues opened.
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Scope of SemanticAnnotation profile BioSchemas/specifications#455, by @AlasdairGray.
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Revision bioschemas/Tools vs spreadsheet 0.5 DRAFT BioSchemas/specifications#454, by @ljgarcia.
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FormalParameter identifier BioSchemas/specifications#453, by @alaninmcr.
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FormalParameter fields BioSchemas/specifications#452, by @alaninmcr.
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Dataset keywords example is array rather than text BioSchemas/specifications#451, by @AlasdairGray.
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1 issue reopened.
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Scholarly Publication Use Cases BioSchemas/specifications#379, by @AlasdairGray.
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2 issues received 6 new comments.
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Revision bioschemas/Tools vs spreadsheet 0.5 DRAFT BioSchemas/specifications#454 (5 comments by @AlasdairGray, @ljgarcia)
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BioSchemas/bioschemas.github.io
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14 pull requests opened.
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Add COVID-19 data portal to live deploy list BioSchemas/bioschemas.github.io#337, by @AlasdairGray.
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Update community call date BioSchemas/bioschemas.github.io#336, by @AlasdairGray.
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Release 1.0 of ComputationalWorkflow and FormalParameter BioSchemas/bioschemas.github.io#335, by @AlasdairGray.
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Remove test files BioSchemas/bioschemas.github.io#334, by @AlasdairGray.
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Champions page BioSchemas/bioschemas.github.io#333, by @AlasdairGray.
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Add details of where Bioschemas has been recommended for use BioSchemas/bioschemas.github.io#332, by @AlasdairGray.
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Update latest presentation BioSchemas/bioschemas.github.io#331, by @AlasdairGray.
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Add iPPI-DB to list of live deploys BioSchemas/bioschemas.github.io#330, by @AlasdairGray.
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Convert all uses of BioSchemas to Bioschemas BioSchemas/bioschemas.github.io#329, by @AlasdairGray.
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Update use cases link BioSchemas/bioschemas.github.io#328, by @ljgarcia.
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Redirect governance to Governance repo BioSchemas/bioschemas.github.io#327, by @AlasdairGray.
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Added Chunlei to the Tools role BioSchemas/bioschemas.github.io#326, by @AlasdairGray.
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Profiles training 08draft BioSchemas/bioschemas.github.io#325, by @ljgarcia.
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Add call for Steering Committee BioSchemas/bioschemas.github.io#324, by @AlasdairGray.
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12 pull requests merged.
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Added details about Nick BioSchemas/bioschemas.github.io#305.
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Add iPPI-DB to list of live deploys BioSchemas/bioschemas.github.io#330.
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Update community call date BioSchemas/bioschemas.github.io#336.
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Add COVID-19 data portal to live deploy list BioSchemas/bioschemas.github.io#337.
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Remove test files BioSchemas/bioschemas.github.io#334.
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Update latest presentation BioSchemas/bioschemas.github.io#331.
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Convert all uses of BioSchemas to Bioschemas BioSchemas/bioschemas.github.io#329.
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Profiles training 08draft BioSchemas/bioschemas.github.io#325.
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Update use cases link BioSchemas/bioschemas.github.io#328.
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Added Chunlei to the Tools role BioSchemas/bioschemas.github.io#326.
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Redirect governance to Governance repo BioSchemas/bioschemas.github.io#327.
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Add call for Steering Committee BioSchemas/bioschemas.github.io#324.
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7 pull requests received 21 new comments.
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Add details of where Bioschemas has been recommended for use BioSchemas/bioschemas.github.io#332 (5 comments by @AlasdairGray, @ljgarcia)
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Convert all uses of BioSchemas to Bioschemas BioSchemas/bioschemas.github.io#329 (5 comments by @alaninmcr, @AlasdairGray)
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Profiles training 08draft BioSchemas/bioschemas.github.io#325 (4 comments by @AlasdairGray, @ljgarcia)
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Add use cases for scholarly publications profiles BioSchemas/bioschemas.github.io#265 (3 comments by @AlasdairGray, @ljgarcia)
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Add iPPI-DB to list of live deploys BioSchemas/bioschemas.github.io#330 (2 comments by @AlasdairGray, @petrospaps)
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BioSchemas/BioschemasMarkupGenerator
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1 issue received 1 new comment.
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https deployment not picking up profiles BioSchemas/BioschemasMarkupGenerator#16 (1 comment by @AlasdairGray)
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Participants
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2 participants joined.
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Chris Child (University of Manchester) joined.
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Yazhuo Cao joined.
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1 organization joined.
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University of Manchester joined.
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GitHub
BioSchemas/bioschemas.github.io
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4 pull requests opened.
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Update date of next community call BioSchemas/bioschemas.github.io#323, by @AlasdairGray.
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Updated NMNHParis live deploy entry BioSchemas/bioschemas.github.io#322, by @AlasdairGray.
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Opalesurfcasting dataset taxon - Legal awareness - French leisure sea fishing BioSchemas/bioschemas.github.io#321, by @eldk.
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Updated LabProtocol to 0.5_DRAFT BioSchemas/bioschemas.github.io#320, by @ljgarcia.
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8 pull requests merged.
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Update date of next community call BioSchemas/bioschemas.github.io#323.
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MassBank Europe deployment BioSchemas/bioschemas.github.io#274.
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Updated NMNHParis live deploy entry BioSchemas/bioschemas.github.io#322.
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Opalesurfcasting dataset taxon - Legal awareness - French leisure sea fishing BioSchemas/bioschemas.github.io#321.
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DisProt conformant with 0.11 Protein profile BioSchemas/bioschemas.github.io#315.
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Updated LabProtocol to 0.5_DRAFT BioSchemas/bioschemas.github.io#320.
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Added missing redirect BioSchemas/bioschemas.github.io#319.
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Workflow redirect fix BioSchemas/bioschemas.github.io#318.
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4 pull requests received 7 new comments.
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Updated LabProtocol to 0.5_DRAFT BioSchemas/bioschemas.github.io#320 (4 comments by @AlasdairGray, @ljgarcia, @petrospaps)
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Opalesurfcasting dataset taxon - Legal awareness - French leisure sea fishing BioSchemas/bioschemas.github.io#321 (1 comment by @AlasdairGray)
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BioSchemas/specifications
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3 issues opened.
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DataRecord BioSchemas/specifications#450, by @huberrob.
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No deployments of Lab Protocol BioSchemas/specifications#448, by @AlasdairGray.
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Mapping to protocols.io BioSchemas/specifications#447, by @alaninmcr.
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5 issues closed.
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Capture arbitrary ancestor/descendant of a Taxon BioSchemas/specifications#324.
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Protein Entity ShEx BioSchemas/specifications#203.
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Protein Profile should suggest ontologies BioSchemas/specifications#355.
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hasHomolog definition BioSchemas/specifications#275.
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partOfOperon definition BioSchemas/specifications#277.
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1 issue reopened.
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DataRecord BioSchemas/specifications#450, by @AlasdairGray.
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10 issues received 27 new comments.
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No deployments of Lab Protocol BioSchemas/specifications#448 (5 comments by @alaninmcr, @AlasdairGray, @ljgarcia, @oxgiraldo)
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Add legal_awareness dataset for leisure sea fishing in France to live deploy list BioSchemas/specifications#409 (4 comments by @AlasdairGray, @eldk, @frmichel)
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Denied access to spreadsheets for various profiles BioSchemas/specifications#445 (3 comments by @AlasdairGray, @ljgarcia)
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updates - Course, CourseInstance and TrainingMaterial profiles BioSchemas/specifications#433 (2 comments by @AlasdairGray, @mbrazas)
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Old Workflow drafts not picking up latest draft version of ComputationalWorkflow BioSchemas/specifications#446 (2 comments by @AlasdairGray, @ljgarcia)
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Review MassBank markup and add to LiveDeploys BioSchemas/specifications#198 (1 comment by @AlasdairGray)
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Produce examples for IMPC mice samples using the sample profile BioSchemas/specifications#169 (1 comment by @AlasdairGray)
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1 pull request opened.
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Create courseInstance.json BioSchemas/specifications#449, by @ppalagi.
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1 pull request merged.
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Create courseInstance.json BioSchemas/specifications#449.
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GitHub
BioSchemas/specifications
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11 issues opened.
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Old Workflow drafts not picking up latest draft version of ComputationalWorkflow BioSchemas/specifications#446, by @AlasdairGray.
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Denied access to spreadsheets for various profiles BioSchemas/specifications#445, by @AlasdairGray.
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Broken links for Workflow/ComputationalWorkflow BioSchemas/specifications#444, by @AlasdairGray.
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LabProtocol profile base type BioSchemas/specifications#443, by @AlasdairGray.
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reagentsUsed BioSchemas/specifications#442, by @alaninmcr.
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totalTime definition in LabProtocols BioSchemas/specifications#441, by @jjkoehorst.
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LabProtocol element protocolAdvantage description not clear in combination with property BioSchemas/specifications#440, by @jjkoehorst.
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Training Group Use Cases BioSchemas/specifications#439, by @AlasdairGray.
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LabProtocol minimum requirements (title) BioSchemas/specifications#438, by @jjkoehorst.
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Labprotocol keywords as elements not as a single string BioSchemas/specifications#437, by @jjkoehorst.
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LabProtocol appears not to have description BioSchemas/specifications#436, by @alaninmcr.
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8 issues closed.
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potentialUse BioSchemas/specifications#260.
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Update BioChemEntity version BioSchemas/specifications#216.
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Create markdown for BioChemEntity BioSchemas/specifications#150.
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Add code property to BioChemEntity BioSchemas/specifications#142.
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Broken links for Workflow/ComputationalWorkflow BioSchemas/specifications#444.
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Should sample point to Sample? BioSchemas/specifications#265.
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Examples should be included in LabProtocol specification BioSchemas/specifications#179.
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Labprotocol keywords as elements not as a single string BioSchemas/specifications#437.
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23 issues received 77 new comments.
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updates - Course, CourseInstance and TrainingMaterial profiles BioSchemas/specifications#433 (14 comments by @AlasdairGray, @mbrazas, @philbarker, @ppalagi, @vdda)
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totalTime definition in LabProtocols BioSchemas/specifications#441 (9 comments by @alaninmcr, @jjkoehorst, @ljgarcia, @oxgiraldo)
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LabProtocol element protocolAdvantage description not clear in combination with property BioSchemas/specifications#440 (9 comments by @alaninmcr, @AlasdairGray, @ljgarcia, @oxgiraldo)
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LabProtocol appears not to have description BioSchemas/specifications#436 (8 comments by @AlasdairGray, @ljgarcia, @oxgiraldo)
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reagentsUsed BioSchemas/specifications#442 (7 comments by @alaninmcr, @AlasdairGray, @ljgarcia, @oxgiraldo)
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protocolLimitation property defined 3 times in LabProtocol BioSchemas/specifications#435 (7 comments by @AlasdairGray, @ljgarcia)
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Produce examples for IMPC mice samples using the sample profile BioSchemas/specifications#169 (2 comments by @AlasdairGray, @ficolo)
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Old Workflow drafts not picking up latest draft version of ComputationalWorkflow BioSchemas/specifications#446 (2 comments by @AlasdairGray)
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LabProtocol minimum requirements (title) BioSchemas/specifications#438 (2 comments by @ljgarcia, @oxgiraldo)
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Denied access to spreadsheets for various profiles BioSchemas/specifications#445 (1 comment by @alaninmcr)
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Indicate how should FALDO be used to indicate feature locations BioSchemas/specifications#210 (1 comment by @AlasdairGray)
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Examples should be included in LabProtocol specification BioSchemas/specifications#179 (1 comment by @ljgarcia)
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Labprotocol keywords as elements not as a single string BioSchemas/specifications#437 (1 comment by @AlasdairGray)
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BioSchemas/bioschemas.github.io
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9 pull requests opened.
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Added missing redirect BioSchemas/bioschemas.github.io#319, by @AlasdairGray.
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Workflow redirect fix BioSchemas/bioschemas.github.io#318, by @AlasdairGray.
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Annotation of the 29 JRC representative nanomaterials as ChemicalSubs… BioSchemas/bioschemas.github.io#317, by @egonw.
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Update date of next community call BioSchemas/bioschemas.github.io#316, by @AlasdairGray.
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DisProt conformant with 0.11 Protein profile BioSchemas/bioschemas.github.io#315, by @AlasdairGray.
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Add Patricia Palagi as a Bioschemas person BioSchemas/bioschemas.github.io#314, by @AlasdairGray.
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Updated Scholia deployment info BioSchemas/bioschemas.github.io#313, by @egonw.
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Added the BridgeDb mapping databases. BioSchemas/bioschemas.github.io#312, by @egonw.
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Update LabProtocol redirects BioSchemas/bioschemas.github.io#311, by @AlasdairGray.
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8 pull requests merged.
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Annotation of the 29 JRC representative nanomaterials as ChemicalSubs… BioSchemas/bioschemas.github.io#317.
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Update date of next community call BioSchemas/bioschemas.github.io#316.
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Add Patricia Palagi as a Bioschemas person BioSchemas/bioschemas.github.io#314.
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Added the BridgeDb mapping databases. BioSchemas/bioschemas.github.io#312.
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Updated Scholia deployment info BioSchemas/bioschemas.github.io#313.
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Update LabProtocol redirects BioSchemas/bioschemas.github.io#311.
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Update links to latest version BioSchemas/bioschemas.github.io#308.
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Fixed typo in label of rangeEnd property BioSchemas/bioschemas.github.io#310.
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2 pull requests received 3 new comments.
BioSchemas/schemaorg
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1 pull request opened.
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Update LabProtocol type acc. to 0.4_DRAFT profile BioSchemas/schemaorg#10, by @ljgarcia.
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2 pull requests received 5 new comments.
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Update LabProtocol type acc. to 0.4_DRAFT profile BioSchemas/schemaorg#10 (4 comments by @ljgarcia, @oxgiraldo)
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Update from upstream schema.org master 2020-07-07 (v.8.x) BioSchemas/schemaorg#8 (1 comment by @AlasdairGray)
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Participants
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1 participant joined.
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Mariya Dimitrova (Pensoft Publishers) joined.
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1 organization joined.
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Pensoft Publishers joined.
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GitHub
BioSchemas/bioschemas.github.io
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7 pull requests opened.
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Fixed typo in label of rangeEnd property BioSchemas/bioschemas.github.io#310, by @AlasdairGray.
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Update date of next community call BioSchemas/bioschemas.github.io#309, by @AlasdairGray.
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Update links to latest version BioSchemas/bioschemas.github.io#308, by @ljgarcia.
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Create 0.4-DRAFT-2020_07_23.html BioSchemas/bioschemas.github.io#307, by @ljgarcia.
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Add details of monthly community call to upcoming events BioSchemas/bioschemas.github.io#306, by @AlasdairGray.
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Added details about Nick BioSchemas/bioschemas.github.io#305, by @AlasdairGray.
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Workflow 0.5 BioSchemas/bioschemas.github.io#304, by @alaninmcr.
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4 pull requests merged.
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Workflow 0.5 BioSchemas/bioschemas.github.io#304.
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Update date of next community call BioSchemas/bioschemas.github.io#309.
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Create 0.4-DRAFT-2020_07_23.html BioSchemas/bioschemas.github.io#307.
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Add details of monthly community call to upcoming events BioSchemas/bioschemas.github.io#306.
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3 pull requests received 11 new comments.
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Workflow 0.5 BioSchemas/bioschemas.github.io#304 (8 comments by @alaninmcr, @AlasdairGray, @ljgarcia, @stain)
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BioSchemas/specifications
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3 issues opened.
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protocolLimitation property defined 3 times in LabProtocol BioSchemas/specifications#435, by @AlasdairGray.
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FormalParameters profile is missing examples BioSchemas/specifications#434, by @AlasdairGray.
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updates - Course, CourseInstance and TrainingMaterial profiles BioSchemas/specifications#433, by @ppalagi.
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1 issue closed.
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Use cases missing for workflows BioSchemas/specifications#411.
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1 issue reopened.
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SequenceAnnotation definition BioSchemas/specifications#283, by @AlasdairGray.
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8 issues received 8 new comments.
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Migrate examples into profile for https://bioschemas.org/specifications/drafts/Workflow/ BioSchemas/specifications#361 (1 comment by @AlasdairGray)
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Examples should be included in LabProtocol specification BioSchemas/specifications#179 (1 comment by @ljgarcia)
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1 pull request opened.
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Measurement type BioSchemas/specifications#432, by @bedroesb.
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BioSchemas/schemaorg
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3 pull requests opened.
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WIP: Attempt to merge schemaorg master 2020-07-08 into BioChemEntity branch BioSchemas/schemaorg#9, by @stain.
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Update from upstream schema.org master 2020-07-07 (v.8.x) BioSchemas/schemaorg#8, by @stain.
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Workflow BioSchemas/schemaorg#7, by @alaninmcr.
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2 pull requests merged.
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WIP: Attempt to merge schemaorg master 2020-07-08 into BioChemEntity branch BioSchemas/schemaorg#9.
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Workflow BioSchemas/schemaorg#7.
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3 pull requests received 30 new comments.
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Update from upstream schema.org master 2020-07-07 (v.8.x) BioSchemas/schemaorg#8 (4 comments by @AlasdairGray, @stain)
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WIP: Attempt to merge schemaorg master 2020-07-08 into BioChemEntity branch BioSchemas/schemaorg#9 (2 comments by @AlasdairGray)
Participants
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1 participant joined.
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Omar Mohammad joined.
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GitHub
BioSchemas/specifications
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4 issues opened.
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Provide web pages for each proposed property BioSchemas/specifications#431, by @AlasdairGray.
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TaxonName - CreativeWork/Thing properties - are all necessary? BioSchemas/specifications#430, by @mjy.
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Do we need to connect a TaxonName back to a Taxon? BioSchemas/specifications#429, by @AlasdairGray.
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Phenotype profile definitions need to be consistent with type definitions BioSchemas/specifications#428, by @AlasdairGray.
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3 issues closed.
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TaxonName - CreativeWork/Thing properties - are all necessary? BioSchemas/specifications#430.
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anatomicalLocation definition BioSchemas/specifications#280.
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Examples of Sample Type for Human BioSample and Museum BioSample BioSchemas/specifications#299.
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5 issues received 7 new comments.
-
Do we need to connect a TaxonName back to a Taxon? BioSchemas/specifications#429 (2 comments by @mjy, @qgroom)
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Adding supporting information to properties BioSchemas/specifications#426 (2 comments by @AlasdairGray, @ljgarcia)
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TaxonName - CreativeWork/Thing properties - are all necessary? BioSchemas/specifications#430 (1 comment by @AlasdairGray)
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Examples of Sample Type for Human BioSample and Museum BioSample BioSchemas/specifications#299 (1 comment by @AlasdairGray)
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BioSchemas/schemaorg
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3 pull requests opened.
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Avoid claiming softwareRequirements BioSchemas/schemaorg#6, by @stain.
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.xl file to BAM file BioSchemas/schemaorg#5, by @stain.
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Avoid restating properties from schema.rdfa BioSchemas/schemaorg#4, by @stain.
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3 pull requests merged.
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.xl file to BAM file BioSchemas/schemaorg#5.
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Avoid claiming softwareRequirements BioSchemas/schemaorg#6.
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Avoid restating properties from schema.rdfa BioSchemas/schemaorg#4.
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BioSchemas/bioschemas.github.io
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15 pull requests opened.
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Added E-UK hackathon BioSchemas/bioschemas.github.io#303, by @AlasdairGray.
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Add publication BioSchemas/bioschemas.github.io#302, by @AlasdairGray.
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Fixing errors in UniProt entry BioSchemas/bioschemas.github.io#301, by @AlasdairGray.
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fixed typo BioSchemas/bioschemas.github.io#300, by @AlasdairGray.
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Add EGA study markup to list of live deploys BioSchemas/bioschemas.github.io#299, by @AlasdairGray.
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Add link to slides BioSchemas/bioschemas.github.io#298, by @AlasdairGray.
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Add initial page for Biohackathon-Europe BioSchemas/bioschemas.github.io#297, by @AlasdairGray.
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Meeting page for plant markathon BioSchemas/bioschemas.github.io#296, by @AlasdairGray.
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Various website fixes BioSchemas/bioschemas.github.io#295, by @AlasdairGray.
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Update latest presentation BioSchemas/bioschemas.github.io#294, by @AlasdairGray.
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Update ah2020 meeting page BioSchemas/bioschemas.github.io#293, by @AlasdairGray.
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Change homepage link BioSchemas/bioschemas.github.io#292, by @AlasdairGray.
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Corrected link for call document BioSchemas/bioschemas.github.io#291, by @AlasdairGray.
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Governance BioSchemas/bioschemas.github.io#290, by @AlasdairGray.
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Add BMUSE to the tools page and tidy up other tools BioSchemas/bioschemas.github.io#289, by @AlasdairGray.
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18 pull requests merged.
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Added E-UK hackathon BioSchemas/bioschemas.github.io#303.
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Add publication BioSchemas/bioschemas.github.io#302.
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Fixing errors in UniProt entry BioSchemas/bioschemas.github.io#301.
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fixed typo BioSchemas/bioschemas.github.io#300.
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Add EGA study markup to list of live deploys BioSchemas/bioschemas.github.io#299.
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Add link to slides BioSchemas/bioschemas.github.io#298.
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Add Covid-19 Workflow Hub to live deploys page BioSchemas/bioschemas.github.io#280.
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Add initial page for Biohackathon-Europe BioSchemas/bioschemas.github.io#297.
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Update ah2020 meeting page BioSchemas/bioschemas.github.io#293.
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Meeting page for plant markathon BioSchemas/bioschemas.github.io#296.
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Update latest presentation BioSchemas/bioschemas.github.io#294.
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Various website fixes BioSchemas/bioschemas.github.io#295.
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Create page for new profile TaxonName BioSchemas/bioschemas.github.io#253.
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Change homepage link BioSchemas/bioschemas.github.io#292.
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Corrected link for call document BioSchemas/bioschemas.github.io#291.
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Publish Phenotype 0.2 draft BioSchemas/bioschemas.github.io#282.
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Add BMUSE to the tools page and tidy up other tools BioSchemas/bioschemas.github.io#289.
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Governance BioSchemas/bioschemas.github.io#290.
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6 pull requests received 25 new comments.
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Create page for new profile TaxonName BioSchemas/bioschemas.github.io#253 (10 comments by @AlasdairGray, @frmichel, @ljgarcia)
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Update ah2020 meeting page BioSchemas/bioschemas.github.io#293 (4 comments by @AlasdairGray, @ljgarcia)
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Publish Phenotype 0.2 draft BioSchemas/bioschemas.github.io#282 (4 comments by @AlasdairGray, @ljgarcia)
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Add Covid-19 Workflow Hub to live deploys page BioSchemas/bioschemas.github.io#280 (2 comments by @AlasdairGray)
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Add BMUSE to the tools page and tidy up other tools BioSchemas/bioschemas.github.io#289 (2 comments by @AlasdairGray, @ljgarcia)
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BioSchemas/governance
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1 issue closed.
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Definition of approval / consensus of Steering Council BioSchemas/governance#3.
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1 pull request merged.
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RFC for Bioschemas Governance 1.0 BioSchemas/governance#2.
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1 pull request received 1 new comment.
GitHub
BioSchemas/bioschemas.github.io
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16 pull requests opened.
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Adding protein and dataset for Guide to Pharmacology BioSchemas/bioschemas.github.io#288, by @AlasdairGray.
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Add community call 202006 BioSchemas/bioschemas.github.io#287, by @AlasdairGray.
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Change document link BioSchemas/bioschemas.github.io#286, by @AlasdairGray.
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Adding eDGAR to live deploy list BioSchemas/bioschemas.github.io#285, by @AlasdairGray.
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Adding PhenPath to live deploy page BioSchemas/bioschemas.github.io#284, by @AlasdairGray.
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AHM2020 Meeting Notes Link BioSchemas/bioschemas.github.io#283, by @AlasdairGray.
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Publish Phenotype 0.2 draft BioSchemas/bioschemas.github.io#282, by @AlasdairGray.
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Live deploy pcddb BioSchemas/bioschemas.github.io#281, by @AlasdairGray.
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Add Covid-19 Workflow Hub to live deploys page BioSchemas/bioschemas.github.io#280, by @AlasdairGray.
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Update index.html BioSchemas/bioschemas.github.io#279, by @CaroleGoble.
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Adding Giulia Babbi to the community BioSchemas/bioschemas.github.io#278, by @AlasdairGray.
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Added Scholia Taxon. BioSchemas/bioschemas.github.io#277, by @egonw.
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Workflow 0.4 BioSchemas/bioschemas.github.io#276, by @alaninmcr.
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added eNanoMapper Dataset deployment BioSchemas/bioschemas.github.io#275, by @egonw.
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MassBank Europe deployment BioSchemas/bioschemas.github.io#274, by @egonw.
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Add two publicatoins BioSchemas/bioschemas.github.io#273, by @ljgarcia.
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15 pull requests merged.
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Adding protein and dataset for Guide to Pharmacology BioSchemas/bioschemas.github.io#288.
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Adding PhenPath to live deploy page BioSchemas/bioschemas.github.io#284.
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Adding eDGAR to live deploy list BioSchemas/bioschemas.github.io#285.
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Add community call 202006 BioSchemas/bioschemas.github.io#287.
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Add use cases for scholarly publications profiles BioSchemas/bioschemas.github.io#265.
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Change document link BioSchemas/bioschemas.github.io#286.
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Old profile URL redirects BioSchemas/bioschemas.github.io#252.
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AHM2020 Meeting Notes Link BioSchemas/bioschemas.github.io#283.
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Update index.html BioSchemas/bioschemas.github.io#279.
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Add two publicatoins BioSchemas/bioschemas.github.io#273.
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Live deploy pcddb BioSchemas/bioschemas.github.io#281.
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Added Scholia Taxon. BioSchemas/bioschemas.github.io#277.
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Adding Giulia Babbi to the community BioSchemas/bioschemas.github.io#278.
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Workflow 0.4 BioSchemas/bioschemas.github.io#276.
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New meeting ahm2020 BioSchemas/bioschemas.github.io#258.
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1 pull request closed.
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Create profile for Matt Styles BioSchemas/bioschemas.github.io#188.
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10 pull requests received 40 new comments.
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Publish Phenotype 0.2 draft BioSchemas/bioschemas.github.io#282 (10 comments by @AlasdairGray, @GiuliaBabbi, @ljgarcia)
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added eNanoMapper Dataset deployment BioSchemas/bioschemas.github.io#275 (8 comments by @AlasdairGray, @egonw, @ljgarcia)
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Add use cases for scholarly publications profiles BioSchemas/bioschemas.github.io#265 (4 comments by @AlasdairGray, @ljgarcia)
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Create profile for Matt Styles BioSchemas/bioschemas.github.io#188 (2 comments by @AlasdairGray, @stylesm)
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Add Covid-19 Workflow Hub to live deploys page BioSchemas/bioschemas.github.io#280 (1 comment by @AlasdairGray)
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Adding Giulia Babbi to the community BioSchemas/bioschemas.github.io#278 (1 comment by @AlasdairGray)
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BioSchemas/governance
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1 issue received 2 new comments.
-
Definition of approval / consensus of Steering Council BioSchemas/governance#3 (2 comments by @AlasdairGray)
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1 pull request received 2 new comments.
BioSchemas/specifications
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4 issues opened.
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Adding supporting information to properties BioSchemas/specifications#426, by @ljgarcia.
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Update DisProt protein example to the latest version BioSchemas/specifications#422, by @ljgarcia.
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Update DisProt DataCatalog example BioSchemas/specifications#421, by @ljgarcia.
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Review meetings template BioSchemas/specifications#419, by @AlasdairGray.
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2 issues closed.
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Create a basic Phenotype profile BioSchemas/specifications#144.
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Find a way to include evidences for annotations or properties in general BioSchemas/specifications#141.
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5 issues received 11 new comments.
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Adding supporting information to properties BioSchemas/specifications#426 (7 comments by @AlasdairGray, @GiuliaBabbi, @ljgarcia, @profgiuseppe)
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Find a way to include evidences for annotations or properties in general BioSchemas/specifications#141 (1 comment by @ljgarcia)
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5 pull requests opened.
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RepeatsDB files added BioSchemas/specifications#427, by @Lisanna.
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Add MobiDB examples for DataCatalog and DataRecord BioSchemas/specifications#425, by @ivanmicetic.
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Revert "Fix symlinks of DisProt examples " BioSchemas/specifications#424, by @ljgarcia.
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Nextprot dataset and protein examples BioSchemas/specifications#423, by @kwsamarasinghe.
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Fix symlinks of DisProt examples BioSchemas/specifications#420, by @ivanmicetic.
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2 pull requests merged.
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Revert "Fix symlinks of DisProt examples " BioSchemas/specifications#424.
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Fix symlinks of DisProt examples BioSchemas/specifications#420.
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1 pull request closed.
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RepeatsDB files added BioSchemas/specifications#427.
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5 pull requests received 38 new comments.
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Nextprot dataset and protein examples BioSchemas/specifications#423 (16 comments by @AlasdairGray, @kwsamarasinghe, @ljgarcia)
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Add MobiDB examples for DataCatalog and DataRecord BioSchemas/specifications#425 (11 comments by @ljgarcia)
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Fix symlinks of DisProt examples BioSchemas/specifications#420 (5 comments by @ivanmicetic, @ljgarcia)
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BioSchemas/BioschemasMarkupGenerator
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1 pull request merged.
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Bioschemas website restructure BioSchemas/BioschemasMarkupGenerator#13.
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1 pull request received 1 new comment.
GitHub
BioSchemas/specifications
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6 issues opened.
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Define output structure BioSchemas/specifications#418, by @alaninmcr.
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Define input structure BioSchemas/specifications#417, by @alaninmcr.
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Add encodingFormat as a mandatory field BioSchemas/specifications#415, by @alaninmcr.
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Broken links to Bioschemas types in expected types column BioSchemas/specifications#414, by @AlasdairGray.
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Broken link below links table on profile view BioSchemas/specifications#413, by @AlasdairGray.
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Broken link to latest draft Profile on Groups page BioSchemas/specifications#412, by @AlasdairGray.
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34 issues closed.
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Define input structure BioSchemas/specifications#417.
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Define output structure BioSchemas/specifications#418.
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datePublished property for https://bioschemas.org/specifications/drafts/Workflow/ BioSchemas/specifications#363.
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ContactPoint property for https://bioschemas.org/specifications/drafts/Workflow/ BioSchemas/specifications#368.
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Meaning of programmingLanguage BioSchemas/specifications#389.
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Number of licenses BioSchemas/specifications#391.
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Should keywords/tags be mandatory? BioSchemas/specifications#392.
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mainEntityOfPage BioSchemas/specifications#393.
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publisher BioSchemas/specifications#395.
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runtimePlatform BioSchemas/specifications#396.
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author v creator BioSchemas/specifications#397.
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sdPublisher BioSchemas/specifications#401.
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Add encodingFormat as a mandatory field BioSchemas/specifications#415.
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sdLicense BioSchemas/specifications#402.
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inLanguage BioSchemas/specifications#400.
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citation BioSchemas/specifications#398.
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conditionsOfAccess BioSchemas/specifications#394.
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Meaning of the URL BioSchemas/specifications#388.
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Rename input / output BioSchemas/specifications#403.
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identifier cardinality BioSchemas/specifications#387.
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License optionality BioSchemas/specifications#390.
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Add funding BioSchemas/specifications#373.
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Consider owner (contac) and depositor. BioSchemas/specifications#371.
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updated needed for MolecularEntity documentation of the SMILES property BioSchemas/specifications#241.
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move MolecularEntity and ChemicalSubstance into this repo BioSchemas/specifications#242.
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Groups page should list latest draft when it is newer than the latest release BioSchemas/specifications#384.
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Bioschemas First Release to Schema.org BioSchemas/specifications#321.
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Update profiles for candidate release types BioSchemas/specifications#346.
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Taxon profile 0.4-DRAFT is in line with Taxon type 0.3-RC. BioSchemas/specifications#408.
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Broken link to latest draft Profile on Groups page BioSchemas/specifications#412.
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Gene Profile 0.5-DRAFT not in sync with Gene type 0.3-RC BioSchemas/specifications#353.
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Draft table links to wrong version if there is a release that is being revised BioSchemas/specifications#381.
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Links from Groups to Types are broken BioSchemas/specifications#382.
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Protein discrepancy in expected types of taxonomicRange BioSchemas/specifications#410.
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1 issue reopened.
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inLanguage BioSchemas/specifications#400, by @alaninmcr.
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32 issues received 58 new comments.
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Taxon profile 0.4-DRAFT is in line with Taxon type 0.3-RC. BioSchemas/specifications#408 (8 comments by @AlasdairGray, @frmichel, @ljgarcia)
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Gene Profile 0.5-DRAFT not in sync with Gene type 0.3-RC BioSchemas/specifications#353 (5 comments by @AlasdairGray, @ljgarcia)
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datePublished property for https://bioschemas.org/specifications/drafts/Workflow/ BioSchemas/specifications#363 (2 comments by @alaninmcr, @stuzart)
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Should keywords/tags be mandatory? BioSchemas/specifications#392 (2 comments by @alaninmcr, @stuzart)
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Consider owner (contac) and depositor. BioSchemas/specifications#371 (2 comments by @alaninmcr, @stuzart)
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updated needed for MolecularEntity documentation of the SMILES property BioSchemas/specifications#241 (2 comments by @AlasdairGray, @egonw)
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move MolecularEntity and ChemicalSubstance into this repo BioSchemas/specifications#242 (2 comments by @AlasdairGray, @egonw)
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Groups page should list latest draft when it is newer than the latest release BioSchemas/specifications#384 (1 comment by @AlasdairGray)
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Protein discrepancy in expected types of taxonomicRange BioSchemas/specifications#410 (1 comment by @ljgarcia)
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1 pull request opened.
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Port/shex from bio hackathon BioSchemas/specifications#416, by @egonw.
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1 pull request merged.
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Port/shex from bio hackathon BioSchemas/specifications#416.
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BioSchemas/BioschemasMarkupGenerator
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6 issues opened.
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https deployment not picking up profiles BioSchemas/BioschemasMarkupGenerator#16, by @AlasdairGray.
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Download file has .html file type BioSchemas/BioschemasMarkupGenerator#15, by @AlasdairGray.
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Generated markup does not include all properties completed BioSchemas/BioschemasMarkupGenerator#14, by @AlasdairGray.
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Specialised DataRecord profiles BioSchemas/BioschemasMarkupGenerator#12, by @AlasdairGray.
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Only generate most up-to-date schemas BioSchemas/BioschemasMarkupGenerator#11, by @AlasdairGray.
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Schema generation needs to be updated to new Bisochemas website structure BioSchemas/BioschemasMarkupGenerator#10, by @AlasdairGray.
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3 issues closed.
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missing rdfa & microdata BioSchemas/BioschemasMarkupGenerator#7.
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Schema generation needs to be updated to new Bisochemas website structure BioSchemas/BioschemasMarkupGenerator#10.
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Fails if definition for expected type can't be found BioSchemas/BioschemasMarkupGenerator#9.
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5 issues received 7 new comments.
-
Schema generation needs to be updated to new Bisochemas website structure BioSchemas/BioschemasMarkupGenerator#10 (3 comments by @AlasdairGray)
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Specialised DataRecord profiles BioSchemas/BioschemasMarkupGenerator#12 (1 comment by @AlasdairGray)
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JSON Schemas contain invalid format text declaration BioSchemas/BioschemasMarkupGenerator#8 (1 comment by @AlasdairGray)
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Fails if definition for expected type can't be found BioSchemas/BioschemasMarkupGenerator#9 (1 comment by @AlasdairGray)
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1 pull request opened.
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Bioschemas website restructure BioSchemas/BioschemasMarkupGenerator#13, by @AlasdairGray.
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BioSchemas/governance
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1 issue opened.
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Definition of approval / consensus of Steering Council BioSchemas/governance#3, by @jgrethe.
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-
1 issue received 2 new comments.
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Definition of approval / consensus of Steering Council BioSchemas/governance#3 (2 comments by @AlasdairGray, @jgrethe)
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1 pull request received 1 new comment.
BioSchemas/bioschemas.github.io
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12 pull requests opened.
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Adding PCDDB to the set of live deploys BioSchemas/bioschemas.github.io#272, by @AlasdairGray.
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Backslash clarification BioSchemas/bioschemas.github.io#271, by @egonw.
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Covid-19 news about new profile releases BioSchemas/bioschemas.github.io#270, by @AlasdairGray.
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Release ChemicalSubstance, Gene, MolecularEntity, Protein, and Taxon profiles BioSchemas/bioschemas.github.io#269, by @AlasdairGray.
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Issue412 group latest draft link BioSchemas/bioschemas.github.io#268, by @AlasdairGray.
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Fix issue 408 BioSchemas/bioschemas.github.io#267, by @ljgarcia.
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Add UniProt Dataset to live deploys BioSchemas/bioschemas.github.io#266, by @AlasdairGray.
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Add use cases for scholarly publications profiles BioSchemas/bioschemas.github.io#265, by @ljgarcia.
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Fix Issue 381 BioSchemas/bioschemas.github.io#264, by @AlasdairGray.
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Fix broken links and display newest draft before latest release, plea… BioSchemas/bioschemas.github.io#263, by @petrospaps.
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Create 0.10-DRAFT-2020_04_02.html BioSchemas/bioschemas.github.io#262, by @ljgarcia.
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Issues 353 gene profile new draft BioSchemas/bioschemas.github.io#261, by @ljgarcia.
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12 pull requests merged.
-
Adding PCDDB to the set of live deploys BioSchemas/bioschemas.github.io#272.
-
Covid-19 news about new profile releases BioSchemas/bioschemas.github.io#270.
-
Backslash clarification BioSchemas/bioschemas.github.io#271.
-
Release ChemicalSubstance, Gene, MolecularEntity, Protein, and Taxon profiles BioSchemas/bioschemas.github.io#269.
-
Fix issue 408 BioSchemas/bioschemas.github.io#267.
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Issue412 group latest draft link BioSchemas/bioschemas.github.io#268.
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Add UniProt Dataset to live deploys BioSchemas/bioschemas.github.io#266.
-
Fix broken links and display newest draft before latest release, plea… BioSchemas/bioschemas.github.io#263.
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Fix Issue 381 BioSchemas/bioschemas.github.io#264.
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Create 0.10-DRAFT-2020_04_02.html BioSchemas/bioschemas.github.io#262.
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Issues 353 gene profile new draft BioSchemas/bioschemas.github.io#261.
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Check for no use case declaration BioSchemas/bioschemas.github.io#260.
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7 pull requests received 10 new comments.
-
Create 0.10-DRAFT-2020_04_02.html BioSchemas/bioschemas.github.io#262 (3 comments by @AlasdairGray, @ljgarcia)
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Release ChemicalSubstance, Gene, MolecularEntity, Protein, and Taxon profiles BioSchemas/bioschemas.github.io#269 (2 comments by @AlasdairGray, @CaroleGoble)
-
Adding PCDDB to the set of live deploys BioSchemas/bioschemas.github.io#272 (1 comment by @petrospaps)
-
Add UniProt Dataset to live deploys BioSchemas/bioschemas.github.io#266 (1 comment by @AlasdairGray)
-
Fix broken links and display newest draft before latest release, plea… BioSchemas/bioschemas.github.io#263 (1 comment by @AlasdairGray)
-
GitHub
BioSchemas/specifications
-
28 issues opened.
-
Use cases missing for workflows BioSchemas/specifications#411, by @AlasdairGray.
-
Protein discrepancy in expected types of taxonomicRange BioSchemas/specifications#410, by @AlasdairGray.
-
Add legal_awareness dataset for leisure sea fishing in France to live deploy list BioSchemas/specifications#409, by @AlasdairGray.
-
Taxon profile 0.4-DRAFT is in line with Taxon type 0.3-RC. BioSchemas/specifications#408, by @AlasdairGray.
-
Example datasets BioSchemas/specifications#407, by @alaninmcr.
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Should tutorial and documentation be added? BioSchemas/specifications#406, by @alaninmcr.
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Should depositor be added? BioSchemas/specifications#405, by @alaninmcr.
-
Should contactPoint be added? BioSchemas/specifications#404, by @alaninmcr.
-
Rename input / output BioSchemas/specifications#403, by @alaninmcr.
-
sdLicense BioSchemas/specifications#402, by @alaninmcr.
-
sdPublisher BioSchemas/specifications#401, by @alaninmcr.
-
inLanguage BioSchemas/specifications#400, by @alaninmcr.
-
funder / fundingScheme BioSchemas/specifications#399, by @alaninmcr.
-
citation BioSchemas/specifications#398, by @alaninmcr.
-
author v creator BioSchemas/specifications#397, by @alaninmcr.
-
runtimePlatform BioSchemas/specifications#396, by @alaninmcr.
-
publisher BioSchemas/specifications#395, by @alaninmcr.
-
conditionsOfAccess BioSchemas/specifications#394, by @alaninmcr.
-
mainEntityOfPage BioSchemas/specifications#393, by @alaninmcr.
-
Should keywords/tags be mandatory? BioSchemas/specifications#392, by @alaninmcr.
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Number of licenses BioSchemas/specifications#391, by @alaninmcr.
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License optionality BioSchemas/specifications#390, by @alaninmcr.
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Meaning of programmingLanguage BioSchemas/specifications#389, by @alaninmcr.
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Meaning of the URL BioSchemas/specifications#388, by @alaninmcr.
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identifier cardinality BioSchemas/specifications#387, by @alaninmcr.
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Using bioschemas namespace for bioschemas types/profiles BioSchemas/specifications#386, by @ljgarcia.
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Example folders missing for some profiles BioSchemas/specifications#385, by @AlasdairGray.
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Groups page should list latest draft when it is newer than the latest release BioSchemas/specifications#384, by @AlasdairGray.
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11 issues closed.
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Protein type version 0.2-DRAFT and profile version 0.8-DRAFT for review BioSchemas/specifications#318.
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replace molecularFormula with chemicalComposition for ChemicalSubstance BioSchemas/specifications#288.
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Should depositor be added? BioSchemas/specifications#405.
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Should tutorial and documentation be added? BioSchemas/specifications#406.
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Example datasets BioSchemas/specifications#407.
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Should contactPoint be added? BioSchemas/specifications#404.
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funder / fundingScheme BioSchemas/specifications#399.
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reorganise example subfolders in specifications directory BioSchemas/specifications#352.
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MolecularEntity profile v0.2draft does not correspond with type 0.3-RC BioSchemas/specifications#354.
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Broken links to profiles on live deploys page BioSchemas/specifications#376.
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Types display template has wrong subheadings BioSchemas/specifications#380.
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32 issues received 44 new comments.
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Taxon profile 0.4-DRAFT is in line with Taxon type 0.3-RC. BioSchemas/specifications#408 (2 comments by @AlasdairGray, @frmichel)
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Should keywords/tags be mandatory? BioSchemas/specifications#392 (2 comments by @AlasdairGray, @nsjuty)
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Links from Groups to Types are broken BioSchemas/specifications#382 (2 comments by @AlasdairGray, @petrospaps)
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Update profiles for candidate release types BioSchemas/specifications#346 (1 comment by @AlasdairGray)
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Protein type version 0.2-DRAFT and profile version 0.8-DRAFT for review BioSchemas/specifications#318 (1 comment by @AlasdairGray)
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replace molecularFormula with chemicalComposition for ChemicalSubstance BioSchemas/specifications#288 (1 comment by @AlasdairGray)
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move MolecularEntity and ChemicalSubstance into this repo BioSchemas/specifications#242 (1 comment by @AlasdairGray)
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Gene Profile 0.5-DRAFT not in sync with Gene type 0.3-RC BioSchemas/specifications#353 (1 comment by @AlasdairGray)
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Using bioschemas namespace for bioschemas types/profiles BioSchemas/specifications#386 (1 comment by @AlasdairGray)
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Broken links to profiles on live deploys page BioSchemas/specifications#376 (1 comment by @petrospaps)
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Types display template has wrong subheadings BioSchemas/specifications#380 (1 comment by @petrospaps)
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1 pull request opened.
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Major Restructure and Overhaul of Repository BioSchemas/specifications#383, by @AlasdairGray.
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1 pull request merged.
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Major Restructure and Overhaul of Repository BioSchemas/specifications#383.
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1 pull request received 25 new comments.
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Major Restructure and Overhaul of Repository BioSchemas/specifications#383 (25 comments by @AlasdairGray, @ljgarcia)
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BioSchemas/bioschemas.github.io
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4 pull requests opened.
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Check for no use case declaration BioSchemas/bioschemas.github.io#260, by @AlasdairGray.
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Added alert for Covid activity BioSchemas/bioschemas.github.io#259, by @AlasdairGray.
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New meeting ahm2020 BioSchemas/bioschemas.github.io#258, by @AlasdairGray.
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Workflow 0.3 draft BioSchemas/bioschemas.github.io#257, by @AlasdairGray.
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2 pull requests merged.
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Added alert for Covid activity BioSchemas/bioschemas.github.io#259.
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Workflow 0.3 draft BioSchemas/bioschemas.github.io#257.
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BioSchemas/governance
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2 pull requests opened.
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RFC for Bioschemas Governance 1.0 BioSchemas/governance#2, by @AlasdairGray.
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Corrected broken image link BioSchemas/governance#1, by @AlasdairGray.
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1 pull request merged.
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Corrected broken image link BioSchemas/governance#1.
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2 pull requests received 2 new comments.
GitHub
BioSchemas/specifications
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7 issues opened.
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Links from Groups to Types are broken BioSchemas/specifications#382, by @AlasdairGray.
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Draft table links to wrong version if there is a release that is being revised BioSchemas/specifications#381, by @AlasdairGray.
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Types display template has wrong subheadings BioSchemas/specifications#380, by @AlasdairGray.
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Scholarly Publication Use Cases BioSchemas/specifications#379, by @AlasdairGray.
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Crosswalk vocabulary column BioSchemas/specifications#378, by @AlasdairGray.
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Add details of new project funding to website BioSchemas/specifications#377, by @AlasdairGray.
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Broken links to profiles on live deploys page BioSchemas/specifications#376, by @AlasdairGray.
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2 issues closed.
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Improve display of available profiles and types on the website BioSchemas/specifications#356.
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Improve archive of profile (and type) versions BioSchemas/specifications#357.
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3 issues received 15 new comments.
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Taxon and TaxonName BioSchemas/specifications#309 (10 comments by @AlasdairGray, @cboettig, @frmichel)
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Broken links to profiles on live deploys page BioSchemas/specifications#376 (3 comments by @AlasdairGray, @petrospaps)
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Types display template has wrong subheadings BioSchemas/specifications#380 (2 comments by @AlasdairGray, @petrospaps)
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BioSchemas/bioschemas.github.io
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4 pull requests opened.
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Added profile for Matt Yoder BioSchemas/bioschemas.github.io#256, by @AlasdairGray.
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Created profile for Carl Boettiger BioSchemas/bioschemas.github.io#255, by @AlasdairGray.
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EGA have implemented latest release BioSchemas/bioschemas.github.io#254, by @AlasdairGray.
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Create page for new profile TaxonName BioSchemas/bioschemas.github.io#253, by @frmichel.
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2 pull requests merged.
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Added profile for Matt Yoder BioSchemas/bioschemas.github.io#256.
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EGA have implemented latest release BioSchemas/bioschemas.github.io#254.
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1 pull request closed.
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Update Workflow.md BioSchemas/bioschemas.github.io#249.
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6 pull requests received 11 new comments.
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Create page for new profile TaxonName BioSchemas/bioschemas.github.io#253 (4 comments by @AlasdairGray, @frmichel)
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Added profile for Matt Yoder BioSchemas/bioschemas.github.io#256 (3 comments by @AlasdairGray, @mjy)
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GitHub
BioSchemas/specifications
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1 issue opened.
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ability to link Tool to Dataset BioSchemas/specifications#375, by @egonw.
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3 issues received 4 new comments.
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Protein Profile for sites that mix species data BioSchemas/specifications#345 (1 comment by @ljgarcia)
BioSchemas/bioschemas.github.io
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1 pull request opened.
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Old profile URL redirects BioSchemas/bioschemas.github.io#252, by @AlasdairGray.
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1 pull request merged.
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Profile versioning BioSchemas/bioschemas.github.io#244.
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1 pull request received 1 new comment.