Research Object for Scholarly Communication Community Group - Activity in 2022
No matches.
GitHub
ResearchObject/runcrate
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3 pull requests opened.
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Fix handling of default file or dir in params ResearchObject/runcrate#7, by @simleo.
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Support for nested I/O directories ResearchObject/runcrate#6, by @simleo.
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Support for secondary files ResearchObject/runcrate#5, by @simleo.
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3 pull requests merged.
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Fix handling of default file or dir in params ResearchObject/runcrate#7.
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Support for nested I/O directories ResearchObject/runcrate#6.
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Support for secondary files ResearchObject/runcrate#5.
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ResearchObject/ro-terms
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1 issue closed.
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workflow run namespace: property for file checksums ResearchObject/ro-terms#14.
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1 issue received 1 new comment.
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workflow run namespace: property for file checksums ResearchObject/ro-terms#14 (1 comment by @stain)
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1 pull request opened.
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Add terms for some hashing functions ResearchObject/ro-terms#15, by @simleo.
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2 pull requests merged.
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Add terms for some hashing functions ResearchObject/ro-terms#15.
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Add HowToStep to connection's domain ResearchObject/ro-terms#13.
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1 pull request received 1 new comment.
ResearchObject/workflow-run-crate
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2 issues received 3 new comments.
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Join the working group (post here to be added) ResearchObject/workflow-run-crate#1 (2 comments by @RomainDavid24, @zmahnoor14)
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2 pull requests opened.
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Add ML predict pipeline crate obtained with cwltool and runcrate ResearchObject/workflow-run-crate#38, by @simleo.
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Added ml-predict-pipeline-streamflow ResearchObject/workflow-run-crate#37, by @GlassOfWhiskey.
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1 pull request merged.
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Added ml-predict-pipeline-streamflow ResearchObject/workflow-run-crate#37.
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1 pull request received 1 new comment.
ResearchObject/ro-crate
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3 issues received 4 new comments.
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Use Case: Describe a tabular data file directly in RO-Crate metadata ResearchObject/ro-crate#27 (1 comment by @mekline)
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1 pull request opened.
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Review intro ResearchObject/ro-crate#227, by @simleo.
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1 pull request merged.
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Update outreach.md ResearchObject/ro-crate#222.
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ResearchObject/ro-crate-py
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1 issue opened.
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Entity id should not be modifiable ResearchObject/ro-crate-py#140, by @simleo.
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ResearchObject/bh2022-ro-crate-galaxy-dsw
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1 pull request opened.
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Add runcrate section ResearchObject/bh2022-ro-crate-galaxy-dsw#4, by @simleo.
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2 pull requests merged.
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Update paper.md ResearchObject/bh2022-ro-crate-galaxy-dsw#2.
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add orcid and affiliation ResearchObject/bh2022-ro-crate-galaxy-dsw#3.
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GitHub
ResearchObject/runcrate
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4 pull requests opened.
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Clean up the Tox configuration ResearchObject/runcrate#3, by @simleo.
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Docs setup ResearchObject/runcrate#2, by @simleo.
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Handle "cwlprov:None" parameters ResearchObject/runcrate#1, by @simleo.
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4 pull requests merged.
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Add CLI ResearchObject/runcrate#4.
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Clean up the Tox configuration ResearchObject/runcrate#3.
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Docs setup ResearchObject/runcrate#2.
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Handle "cwlprov:None" parameters ResearchObject/runcrate#1.
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ResearchObject/ro-crate
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2 issues opened.
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Requirements for every entity ResearchObject/ro-crate#225, by @ptsefton.
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Distribution request: rocrate on conda forge ResearchObject/ro-crate#217, by @Denubis.
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2 issues closed.
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Consider new intro text which is currently in a google doc ResearchObject/ro-crate#215.
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Distribution request: rocrate on conda forge ResearchObject/ro-crate#217.
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5 issues received 8 new comments.
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Distribution request: rocrate on conda forge ResearchObject/ro-crate#217 (3 comments by @Denubis, @jmfernandez, @simleo)
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Consider new intro text which is currently in a google doc ResearchObject/ro-crate#215 (2 comments by @ptsefton, @stain)
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6 pull requests opened.
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Changed to text to allow multiple types on root - as per #182 which w… ResearchObject/ro-crate#223, by @ptsefton.
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Update outreach.md ResearchObject/ro-crate#222, by @pauldg.
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Move to new version Jekyll theme ResearchObject/ro-crate#221, by @bedroesb.
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Peter's draft on publishing RO-Crates ResearchObject/ro-crate#220, by @stain.
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Update RO-Crate introduction with running example ResearchObject/ro-crate#219, by @stain.
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fix broken link to the profiles crate spec ResearchObject/ro-crate#218, by @stuzart.
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3 pull requests merged.
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Update RO-Crate introduction with running example ResearchObject/ro-crate#219.
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fix broken link to the profiles crate spec ResearchObject/ro-crate#218.
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Ldaca use case ResearchObject/ro-crate#209.
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2 pull requests received 3 new comments.
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Update RO-Crate introduction with running example ResearchObject/ro-crate#219 (2 comments by @stain)
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ResearchObject/workflow-run-crate
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1 issue received 2 new comments.
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Join the working group (post here to be added) ResearchObject/workflow-run-crate#1 (2 comments by @johanneskoester, @lgadelha)
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ResearchObject/ro-terms
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1 issue opened.
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workflow run namespace: property for file checksums ResearchObject/ro-terms#14, by @simleo.
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1 issue received 1 new comment.
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workflow run namespace: property for file checksums ResearchObject/ro-terms#14 (1 comment by @simleo)
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ResearchObject/ro-crate-preview-action
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4 issues opened.
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Use newer preview generation tool ResearchObject/ro-crate-preview-action#8, by @gcapes.
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Fix warning about `set-output` command ResearchObject/ro-crate-preview-action#7, by @gcapes.
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Put action in GitHub marketplace ResearchObject/ro-crate-preview-action#6, by @gcapes.
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Base Docker image off a node Docker image ResearchObject/ro-crate-preview-action#5, by @gcapes.
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5 issues closed.
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Use newer preview generation tool ResearchObject/ro-crate-preview-action#8.
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Base Docker image off a node Docker image ResearchObject/ro-crate-preview-action#5.
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Put action in GitHub marketplace ResearchObject/ro-crate-preview-action#6.
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Fix warning about `set-output` command ResearchObject/ro-crate-preview-action#7.
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Add tags ResearchObject/ro-crate-preview-action#1.
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2 issues reopened.
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Base Docker image off a node Docker image ResearchObject/ro-crate-preview-action#5, by @gcapes.
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4 issues received 10 new comments.
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Base Docker image off a node Docker image ResearchObject/ro-crate-preview-action#5 (4 comments by @gcapes)
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ResearchObject/bh2022-ro-crate-galaxy-dsw
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3 pull requests opened.
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add orcid and affiliation ResearchObject/bh2022-ro-crate-galaxy-dsw#3, by @bgruening.
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Update paper.md ResearchObject/bh2022-ro-crate-galaxy-dsw#2, by @davelopez.
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Update paper.md ResearchObject/bh2022-ro-crate-galaxy-dsw#1, by @vknaisl.
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1 pull request merged.
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Update paper.md ResearchObject/bh2022-ro-crate-galaxy-dsw#1.
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ResearchObject/ro-crate-py
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1 issue opened.
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Distribution request: rocrate-py on conda forge ResearchObject/ro-crate-py#139, by @Denubis.
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1 issue received 5 new comments.
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Distribution request: rocrate-py on conda forge ResearchObject/ro-crate-py#139 (5 comments by @Denubis, @jmfernandez, @simleo, @stain)
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Participants
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1 participant joined.
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Allan Zhang joined.
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GitHub
ResearchObject/ro-crate-preview-action
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4 issues opened.
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Investigate continuous integration test of action ResearchObject/ro-crate-preview-action#4, by @stain.
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Investigate node version warning ResearchObject/ro-crate-preview-action#3, by @gcapes.
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Change behaviour: link to preview from index.html ResearchObject/ro-crate-preview-action#2, by @gcapes.
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2 issues closed.
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Investigate node version warning ResearchObject/ro-crate-preview-action#3.
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Change behaviour: link to preview from index.html ResearchObject/ro-crate-preview-action#2.
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3 issues received 7 new comments.
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Investigate node version warning ResearchObject/ro-crate-preview-action#3 (4 comments by @gcapes, @stain)
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Change behaviour: link to preview from index.html ResearchObject/ro-crate-preview-action#2 (2 comments by @gcapes, @stain)
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ResearchObject/workflow-run-crate
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3 issues opened.
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Representing secondary files ResearchObject/workflow-run-crate#36, by @simleo.
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Representing conditional execution ResearchObject/workflow-run-crate#33, by @simleo.
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Resource requirements ResearchObject/workflow-run-crate#32, by @simleo.
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1 issue closed.
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CQ11 - Parameter connections ResearchObject/workflow-run-crate#25.
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10 issues received 30 new comments.
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CQ2 - Resource usage ResearchObject/workflow-run-crate#10 (8 comments by @jmfernandez, @mr-c, @rsirvent, @simleo, @suecharo)
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CQ4 - environment/container file ResearchObject/workflow-run-crate#12 (7 comments by @dgarijo, @GlassOfWhiskey, @ilveroluca, @simleo)
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CQ1 - Container image ResearchObject/workflow-run-crate#9 (4 comments by @dgarijo, @ilveroluca, @simleo)
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Representing conditional execution ResearchObject/workflow-run-crate#33 (3 comments by @GlassOfWhiskey, @mr-c, @stain)
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CQ6 - Workflow running time ResearchObject/workflow-run-crate#14 (3 comments by @ilveroluca, @simleo)
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cwlprov_to_crate: test converting cwlprovs created for each CWL conformance tests ResearchObject/workflow-run-crate#24 (1 comment by @GlassOfWhiskey)
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3 pull requests opened.
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Add section on parameter connections ResearchObject/workflow-run-crate#35, by @simleo.
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Fix parameter connections ResearchObject/workflow-run-crate#34, by @simleo.
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Add profile draft ResearchObject/workflow-run-crate#31, by @simleo.
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4 pull requests merged.
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Add section on parameter connections ResearchObject/workflow-run-crate#35.
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Fix parameter connections ResearchObject/workflow-run-crate#34.
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Change modeling of parameter connections ResearchObject/workflow-run-crate#29.
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Add profile draft ResearchObject/workflow-run-crate#31.
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2 pull requests received 5 new comments.
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Proposed draft changes to allow for a galaxy history export to be accepted by cwlprov_to_crate.py ResearchObject/workflow-run-crate#30 (2 comments by @pauldg, @stain)
ResearchObject/ro-crate
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3 issues opened.
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Consider new intro text which is currently in a google doc ResearchObject/ro-crate#215, by @ptsefton.
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Task: Update publications page with FDO talks and anything else from the minutes ResearchObject/ro-crate#214, by @ptsefton.
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Representing composite datasets ResearchObject/ro-crate#213, by @simleo.
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2 issues closed.
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HTML preview metadata entry ResearchObject/ro-crate#106.
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Use Case: Allow RO-Crates to have root dataset IDs other than "./" ResearchObject/ro-crate#183.
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1 issue received 3 new comments.
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1 pull request merged.
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Addresses #106 - details of how to describe the ro-crate-preview.html file (and other web stuff) ResearchObject/ro-crate#210.
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2 pull requests received 2 new comments.
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Attempting to address #122 and #124 - mainEntity and mentions ResearchObject/ro-crate#211 (1 comment by @stain)
ResearchObject/ro-terms
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1 pull request opened.
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Add HowToStep to connection's domain ResearchObject/ro-terms#13, by @simleo.
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1 pull request merged.
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Workflow run terms for parameter connections ResearchObject/ro-terms#12.
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1 pull request received 2 new comments.
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Workflow run terms for parameter connections ResearchObject/ro-terms#12 (2 comments by @GlassOfWhiskey, @simleo)
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ResearchObject/ro-crate-py
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2 issues opened.
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Add method to get entities by type ResearchObject/ro-crate-py#138, by @simleo.
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Broken error message in pick_type ResearchObject/ro-crate-py#137, by @simleo.
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Participants
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1 participant joined.
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Melinda Minch (University of Victoria) joined.
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1 participant left.
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Tom Habing (University of Illinois) left.
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1 organization joined.
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University of Victoria joined.
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GitHub
ResearchObject/workflow-run-crate
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1 issue closed.
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cwlprov_to_crate: support for nested workflows ResearchObject/workflow-run-crate#22.
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5 issues received 11 new comments.
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Join the working group (post here to be added) ResearchObject/workflow-run-crate#1 (5 comments by @a-mile, @inutano, @jake-emerson, @steninidak, @suecharo)
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cwlprov_to_crate: support for nested workflows ResearchObject/workflow-run-crate#22 (1 comment by @simleo)
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3 pull requests opened.
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Proposed draft changes to allow for a galaxy history export to be accepted by cwlprov_to_crate.py ResearchObject/workflow-run-crate#30, by @pauldg.
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Change modeling of parameter connections ResearchObject/workflow-run-crate#29, by @simleo.
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cwlprov_to_crate: support for subworkflows ResearchObject/workflow-run-crate#28, by @simleo.
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1 pull request merged.
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cwlprov_to_crate: support for subworkflows ResearchObject/workflow-run-crate#28.
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ResearchObject/ro-terms
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1 issue opened.
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term metadata ResearchObject/ro-terms#11, by @dgarijo.
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1 pull request opened.
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Workflow run terms for parameter connections ResearchObject/ro-terms#12, by @simleo.
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ResearchObject/ro-crate
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1 issue closed.
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Avoid criminalcharacters example ResearchObject/ro-crate#162.
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8 issues received 10 new comments.
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Use Case: RO-Crate as collection of contextual items ResearchObject/ro-crate#122 (2 comments by @stain)
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Use Case: Allow RO-Crates to have root dataset IDs other than "./" ResearchObject/ro-crate#183 (1 comment by @stain)
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4 pull requests opened.
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Attempting to address #122 and #124 - mainEntity and mentions ResearchObject/ro-crate#211, by @ptsefton.
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Addresses #106 - details of how to describe the ro-crate-preview.html file (and other web stuff) ResearchObject/ro-crate#210, by @ptsefton.
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Ldaca use case ResearchObject/ro-crate#209, by @ptsefton.
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Remove criminal references retry ResearchObject/ro-crate#208, by @ptsefton.
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1 pull request merged.
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Remove criminal references retry ResearchObject/ro-crate#208.
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1 pull request received 1 new comment.
ResearchObject/ro-crate-ruby
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1 issue opened.
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Error when reading RO-Crate containing a `Dataset` identified by a `URI` ResearchObject/ro-crate-ruby#28, by @fbacall.
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1 issue closed.
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Error when reading RO-Crate containing a `Dataset` identified by a `URI` ResearchObject/ro-crate-ruby#28.
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1 pull request opened.
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Handle remote file & directory data entities similarly. Fixes #28 ResearchObject/ro-crate-ruby#29, by @fbacall.
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1 pull request merged.
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Handle remote file & directory data entities similarly. Fixes #28 ResearchObject/ro-crate-ruby#29.
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ResearchObject/ro-crate-py
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1 issue opened.
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Fix behavior wrt "missing" data entities ResearchObject/ro-crate-py#135, by @simleo.
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1 issue closed.
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Fix behavior wrt "missing" data entities ResearchObject/ro-crate-py#135.
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1 pull request opened.
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Fix missing file ResearchObject/ro-crate-py#136, by @simleo.
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1 pull request merged.
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Fix missing file ResearchObject/ro-crate-py#136.
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GitHub
ResearchObject/workflow-run-crate
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1 issue opened.
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CQ11 - Parameter connections ResearchObject/workflow-run-crate#25, by @simleo.
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1 issue received 1 new comment.
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2 pull requests opened.
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Restore link from root dataset to workflow run via mentions ResearchObject/workflow-run-crate#27, by @simleo.
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Rebuild cwlprov_to_crate on top of cwlprov-py ResearchObject/workflow-run-crate#26, by @simleo.
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3 pull requests merged.
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Restore link from root dataset to workflow run via mentions ResearchObject/workflow-run-crate#27.
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Rebuild cwlprov_to_crate on top of cwlprov-py ResearchObject/workflow-run-crate#26.
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Support runs with no outputs and file arrays ResearchObject/workflow-run-crate#23.
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ResearchObject/ro-crate-ruby
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1 issue opened.
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Performance issues when adding large number of entities ResearchObject/ro-crate-ruby#27, by @fbacall.
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1 issue received 2 new comments.
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Performance issues when adding large number of entities ResearchObject/ro-crate-ruby#27 (2 comments by @fbacall)
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ResearchObject/ro-crate-py
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1 issue opened.
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Add contentUrl property to files when it's known ResearchObject/ro-crate-py#133, by @simleo.
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1 issue received 1 new comment.
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1 pull request opened.
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Test to check the performance of adding a data entity ResearchObject/ro-crate-py#134, by @simleo.
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1 pull request merged.
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Test to check the performance of adding a data entity ResearchObject/ro-crate-py#134.
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1 pull request received 1 new comment.
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Entity method for appending to property values ResearchObject/ro-crate-py#127 (1 comment by @simleo)
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ResearchObject/ro-crate
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2 issues opened.
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Use Case: Associate Jupyter Notebooks with RO-Crate data ResearchObject/ro-crate#207, by @ptsefton.
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upcoming events on website is hopelessly out of date ResearchObject/ro-crate#206, by @CaroleGoble.
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1 pull request merged.
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Attempts to clarify entity terminology ResearchObject/ro-crate#204.
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1 pull request received 1 new comment.
GitHub
ResearchObject/ro-crate
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3 issues received 4 new comments.
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Join the team (post here to be added) ResearchObject/ro-crate#1 (2 comments by @CaroleGoble, @jake-emerson)
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Use Case: Describe a tabular data file directly in RO-Crate metadata ResearchObject/ro-crate#27 (1 comment by @ptsefton)
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1 pull request opened.
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Attempts to clarify entity terminology ResearchObject/ro-crate#204, by @stain.
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1 pull request merged.
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fix file extension to make the link work ResearchObject/ro-crate#203.
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ResearchObject/workflow-run-crate
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2 issues opened.
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cwlprov_to_crate: test converting cwlprovs created for each CWL conformance tests ResearchObject/workflow-run-crate#24, by @mr-c.
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cwlprov_to_crate: support for nested workflows ResearchObject/workflow-run-crate#22, by @simleo.
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5 issues received 11 new comments.
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cwlprov_to_crate: test converting cwlprovs created for each CWL conformance tests ResearchObject/workflow-run-crate#24 (5 comments by @mr-c, @simleo)
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Join the working group (post here to be added) ResearchObject/workflow-run-crate#1 (2 comments by @GlassOfWhiskey, @simleo)
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2 pull requests opened.
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Support runs with no outputs and file arrays ResearchObject/workflow-run-crate#23, by @simleo.
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cwlprov_to_crate: support Directory inputs / outputs ResearchObject/workflow-run-crate#21, by @simleo.
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1 pull request merged.
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cwlprov_to_crate: support Directory inputs / outputs ResearchObject/workflow-run-crate#21.
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ResearchObject/ro-crate-py
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2 issues opened.
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Handle duplicates in property values ResearchObject/ro-crate-py#132, by @simleo.
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Iterate through graph ResearchObject/ro-crate-py#131, by @SteffenBrinckmann.
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1 issue closed.
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Iterate through graph ResearchObject/ro-crate-py#131.
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2 issues received 7 new comments.
ResearchObject/ro-crate-ruby
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1 issue closed.
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Method for removing things from a crate ResearchObject/ro-crate-ruby#21.
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GitHub
ResearchObject/workflow-run-crate
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10 issues opened.
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CQ10 - Tool wrappers ResearchObject/workflow-run-crate#18, by @simleo.
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CQ9 - Software version ResearchObject/workflow-run-crate#17, by @simleo.
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CQ8 - Workflow inputs and outputs ResearchObject/workflow-run-crate#16, by @simleo.
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CQ7 - Outcome ResearchObject/workflow-run-crate#15, by @simleo.
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CQ6 - Workflow running time ResearchObject/workflow-run-crate#14, by @simleo.
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CQ5 - Step running time ResearchObject/workflow-run-crate#13, by @simleo.
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CQ4 - environment/container file ResearchObject/workflow-run-crate#12, by @simleo.
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CQ3 - Configuration files ResearchObject/workflow-run-crate#11, by @simleo.
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CQ2 - Resource usage ResearchObject/workflow-run-crate#10, by @simleo.
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CQ1 - Container image ResearchObject/workflow-run-crate#9, by @simleo.
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1 issue closed.
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Add extra columns in ro-crate requirements ResearchObject/workflow-run-crate#4.
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4 pull requests opened.
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Add position property to steps ResearchObject/workflow-run-crate#20, by @simleo.
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Update requirements table ResearchObject/workflow-run-crate#19, by @simleo.
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Link step to tool with workExample ResearchObject/workflow-run-crate#8, by @simleo.
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CWLProv converter: param info from workflow file ResearchObject/workflow-run-crate#7, by @simleo.
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4 pull requests merged.
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Add position property to steps ResearchObject/workflow-run-crate#20.
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Update requirements table ResearchObject/workflow-run-crate#19.
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Link step to tool with workExample ResearchObject/workflow-run-crate#8.
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CWLProv converter: param info from workflow file ResearchObject/workflow-run-crate#7.
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ResearchObject/ro-crate-py
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1 issue opened.
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Remove software version defaults ResearchObject/ro-crate-py#130, by @simleo.
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ResearchObject/ro-crate-ruby
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1 issue opened.
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`write_zip` does not handle symlinks correctly ResearchObject/ro-crate-ruby#26, by @fbacall.
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1 issue closed.
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`write_zip` does not handle symlinks correctly ResearchObject/ro-crate-ruby#26.
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ResearchObject/ro-crate
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1 pull request opened.
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fix file extension to make the link work ResearchObject/ro-crate#203, by @marc-portier.
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GitHub
ResearchObject/ro-crate-py
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1 issue opened.
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Allow root dataset to have more than one type ResearchObject/ro-crate-py#125, by @moisbo.
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3 issues closed.
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Allow root dataset to have more than one type ResearchObject/ro-crate-py#125.
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Support for non-slash root data entity ResearchObject/ro-crate-py#34.
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How do I ... ResearchObject/ro-crate-py#72.
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2 issues received 3 new comments.
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Allow root dataset to have more than one type ResearchObject/ro-crate-py#125 (2 comments by @moisbo, @simleo)
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9 pull requests opened.
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Store refs to Entity instances ResearchObject/ro-crate-py#128, by @simleo.
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Entity method for appending to property values ResearchObject/ro-crate-py#127, by @simleo.
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Allow additional types for root dataset ResearchObject/ro-crate-py#126, by @simleo.
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Fix default workflow types initialization ResearchObject/ro-crate-py#124, by @simleo.
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Fix Entity.__getitem__ ResearchObject/ro-crate-py#123, by @simleo.
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Fix logic to detect URLs ResearchObject/ro-crate-py#122, by @simleo.
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Docs revamp ResearchObject/ro-crate-py#121, by @simleo.
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Fix handling of hash marks in IDs ResearchObject/ro-crate-py#120, by @simleo.
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9 pull requests merged.
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Cleanup ResearchObject/ro-crate-py#129.
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Entity method for appending to property values ResearchObject/ro-crate-py#127.
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Allow additional types for root dataset ResearchObject/ro-crate-py#126.
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Support detached crates ResearchObject/ro-crate-py#119.
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Fix default workflow types initialization ResearchObject/ro-crate-py#124.
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Fix Entity.__getitem__ ResearchObject/ro-crate-py#123.
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Fix logic to detect URLs ResearchObject/ro-crate-py#122.
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Docs revamp ResearchObject/ro-crate-py#121.
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Fix handling of hash marks in IDs ResearchObject/ro-crate-py#120.
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1 pull request closed.
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Store refs to Entity instances ResearchObject/ro-crate-py#128.
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2 pull requests received 2 new comments.
ResearchObject/ro-crate
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1 issue opened.
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Use Case: How to use cite-as on a crate? ResearchObject/ro-crate#202, by @ptsefton.
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3 issues received 5 new comments.
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Use Case: Describe a tabular data file directly in RO-Crate metadata ResearchObject/ro-crate#27 (3 comments by @a-mile, @ptsefton)
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1 pull request received 1 new comment.
ResearchObject/workflow-run-crate
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1 pull request opened.
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Requirements review ResearchObject/workflow-run-crate#6, by @simleo.
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2 pull requests merged.
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Requirements review ResearchObject/workflow-run-crate#6.
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Generate crate from CWLProv ResearchObject/workflow-run-crate#5.
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1 pull request received 2 new comments.
GitHub
ResearchObject/ro-crate
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1 issue opened.
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Referencing sections of a document ResearchObject/ro-crate#200, by @simleo.
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2 issues received 3 new comments.
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1 pull request opened.
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Update docs on finding the root dataset ResearchObject/ro-crate#198, by @simleo.
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ResearchObject/ro-terms
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1 pull request opened.
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Create vocabulary.csv ResearchObject/ro-terms#10, by @rapw3k.
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1 pull request merged.
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Create vocabulary.csv ResearchObject/ro-terms#10.
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1 pull request closed.
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Workflow run terms ResearchObject/ro-terms#7.
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1 pull request received 4 new comments.
ResearchObject/workflow-run-crate
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1 pull request opened.
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Generate crate from CWLProv ResearchObject/workflow-run-crate#5, by @simleo.
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1 pull request received 1 new comment.
ResearchObject/ro-crate-py
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1 issue received 1 new comment.
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1 pull request opened.
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Support detached crates ResearchObject/ro-crate-py#119, by @simleo.
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1 pull request received 3 new comments.
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WIP: Galaxy workflow-run export to ro-crate including provenance ResearchObject/ro-crate-py#118 (3 comments by @pauldg, @simleo)
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GitHub
ResearchObject/workflow-run-crate
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1 issue opened.
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Add extra columns in ro-crate requirements ResearchObject/workflow-run-crate#4, by @dgarijo.
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2 issues received 4 new comments.
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Join the working group (post here to be added) ResearchObject/workflow-run-crate#1 (3 comments by @hariszaf, @kjappelbaum, @sphuber)
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Add extra columns in ro-crate requirements ResearchObject/workflow-run-crate#4 (1 comment by @dgarijo)
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1 pull request merged.
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Update prediction pipeline example ResearchObject/workflow-run-crate#3.
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ResearchObject/ro-crate-py
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2 issues opened.
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Package: drop support Python 3.6 and add Python 3.9 and 3.10 ResearchObject/ro-crate-py#114, by @sphuber.
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"file" is a reserved keyword ResearchObject/ro-crate-py#113, by @rsirvent.
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6 issues closed.
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CLI can generate an error when command help is requested ResearchObject/ro-crate-py#97.
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Package: drop support Python 3.6 and add Python 3.9 and 3.10 ResearchObject/ro-crate-py#114.
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"file" is a reserved keyword ResearchObject/ro-crate-py#113.
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Inconsistent defaults for validate_url ResearchObject/ro-crate-py#110.
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Exclude option for crate init ResearchObject/ro-crate-py#106.
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CLI: make specifying IDs more user-friendly ResearchObject/ro-crate-py#107.
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1 issue received 1 new comment.
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6 pull requests opened.
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WIP: Galaxy workflow-run export to ro-crate including provenance ResearchObject/ro-crate-py#118, by @pauldg.
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Add entry for EPFL in copyright header of CLI files ResearchObject/ro-crate-py#117, by @sphuber.
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CLI: do not except when `--help` is passed to sub command ResearchObject/ro-crate-py#116, by @sphuber.
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Package: update Python version support ResearchObject/ro-crate-py#115, by @sphuber.
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Updates to handling of remote data entities ResearchObject/ro-crate-py#112, by @simleo.
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Update CLI ResearchObject/ro-crate-py#111, by @simleo.
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5 pull requests merged.
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Add entry for EPFL in copyright header of CLI files ResearchObject/ro-crate-py#117.
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CLI: do not except when `--help` is passed to sub command ResearchObject/ro-crate-py#116.
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Package: update Python version support ResearchObject/ro-crate-py#115.
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Updates to handling of remote data entities ResearchObject/ro-crate-py#112.
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Update CLI ResearchObject/ro-crate-py#111.
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2 pull requests received 8 new comments.
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CLI: do not except when `--help` is passed to sub command ResearchObject/ro-crate-py#116 (7 comments by @simleo, @sphuber)
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ResearchObject/ro-crate
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1 issue opened.
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Bug report: Our advice on labelling columns in CSV files does not align with Science on Schema.org ResearchObject/ro-crate#194, by @ptsefton.
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2 issues received 6 new comments.
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Join the team (post here to be added) ResearchObject/ro-crate#1 (5 comments by @CaroleGoble, @floWetzels, @jmfernandez, @ptsefton)
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Use Case: integrate with SciNote (or other ELN/LIMS), protocols.io representation/recording of data ResearchObject/ro-crate#191 (1 comment by @NicolasCARPi)
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1 pull request received 6 new comments.
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Add concept Detached RO-Crate ResearchObject/ro-crate#189 (6 comments by @jmfernandez, @ptsefton, @simleo)
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ResearchObject/ro-terms
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1 pull request received 8 new comments.
GitHub
ResearchObject/ro-crate
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2 issues opened.
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Use Case: integrate with SciNote (or other ELN/LIMS), protocols.io representation/recording of data ResearchObject/ro-crate#191, by @sgbaird.
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Use Case: integration/contrasting with GEMD format by Citrine team ResearchObject/ro-crate#190, by @sgbaird.
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2 issues received 3 new comments.
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Use Case: integration/contrasting with GEMD format by Citrine team ResearchObject/ro-crate#190 (1 comment by @ptsefton)
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1 pull request merged.
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Internal references for license and contextual entities ResearchObject/ro-crate#188.
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1 pull request received 6 new comments.
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Add concept Detached RO-Crate ResearchObject/ro-crate#189 (6 comments by @jmfernandez, @ptsefton, @simleo, @stain)
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ResearchObject/workflow-run-crate
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1 issue received 1 new comment.
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Join the working group (post here to be added) ResearchObject/workflow-run-crate#1 (1 comment by @wm75)
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2 pull requests opened.
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Update prediction pipeline example ResearchObject/workflow-run-crate#3, by @simleo.
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Add DeepHealth tissue/tumor prediction pipeline example ResearchObject/workflow-run-crate#2, by @simleo.
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1 pull request merged.
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Add DeepHealth tissue/tumor prediction pipeline example ResearchObject/workflow-run-crate#2.
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ResearchObject/ro-terms
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1 issue opened.
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Support Schema.org style ontologies using Classe and Property items ResearchObject/ro-terms#9, by @ptsefton.
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2 pull requests opened.
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New vocab! text-commons ResearchObject/ro-terms#8, by @ptsefton.
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Workflow run terms ResearchObject/ro-terms#7, by @simleo.
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1 pull request merged.
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New vocab! text-commons ResearchObject/ro-terms#8.
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ResearchObject/ro-crate-py
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4 issues opened.
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Inconsistent defaults for validate_url ResearchObject/ro-crate-py#110, by @simleo.
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write-zip CLI command reinitializes the crate ResearchObject/ro-crate-py#108, by @simleo.
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CLI: make specifying IDs more user-friendly ResearchObject/ro-crate-py#107, by @simleo.
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Exclude option for crate init ResearchObject/ro-crate-py#106, by @simleo.
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1 issue closed.
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write-zip CLI command reinitializes the crate ResearchObject/ro-crate-py#108.
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1 pull request opened.
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Fix write-zip CLI command ResearchObject/ro-crate-py#109, by @simleo.
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1 pull request merged.
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Fix write-zip CLI command ResearchObject/ro-crate-py#109.
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ResearchObject/ro-crate-ruby
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1 issue opened.
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File type should be added for File entries ResearchObject/ro-crate-ruby#25, by @alaninmcr.
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GitHub
ResearchObject/ro-crate
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1 issue opened.
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Bioschemas profile URLs broken ResearchObject/ro-crate#185, by @stain.
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1 issue closed.
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Bioschemas profile URLs broken ResearchObject/ro-crate#185.
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5 issues received 12 new comments.
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Use Case: Allow RO-Crates to have root dataset IDs other than "./" ResearchObject/ro-crate#183 (4 comments by @dgarijo, @simleo, @stain)
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Join the team (post here to be added) ResearchObject/ro-crate#1 (3 comments by @OliverWoolland, @radifar, @RudoWittner)
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Use Case: Allow extra types on root dataset ResearchObject/ro-crate#182 (2 comments by @ptsefton, @stain)
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4 pull requests opened.
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Add concept Detached RO-Crate ResearchObject/ro-crate#189, by @stain.
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Internal references for license and contextual entities ResearchObject/ro-crate#188, by @stain.
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Update bioschemas citations ResearchObject/ro-crate#187, by @stain.
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Release 1.1.2 with typo fixes ResearchObject/ro-crate#184, by @stain.
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5 pull requests merged.
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Update bioschemas citations ResearchObject/ro-crate#187.
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Correct namespace for rdfs:comment ResearchObject/ro-crate#164.
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Fix typos in data entities page ResearchObject/ro-crate#177.
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Typo at Metadata Section ResearchObject/ro-crate#181.
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Wrong knime file in the Complete Workflow Example ResearchObject/ro-crate#180.
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1 pull request closed.
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Release 1.1.2 with typo fixes ResearchObject/ro-crate#184.
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4 pull requests received 5 new comments.
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Internal references for license and contextual entities ResearchObject/ro-crate#188 (1 comment by @stain)
ResearchObject/ro-crate-py
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1 issue closed.
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1 issue reopened.
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1 issue received 4 new comments.
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Adding a file to a new crate gives an error when trying adding source as FTP URI: AttributeError: '_io.BufferedReader' object has no attribute 'getheader' ResearchObject/ro-crate-py#103 (4 comments by @lrodrin, @simleo)
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2 pull requests opened.
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Workflow RO-Crate 1.0 compliance ResearchObject/ro-crate-py#105, by @simleo.
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Fix handling of non-HTTP(S) URIs ResearchObject/ro-crate-py#104, by @simleo.
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2 pull requests merged.
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Workflow RO-Crate 1.0 compliance ResearchObject/ro-crate-py#105.
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Fix handling of non-HTTP(S) URIs ResearchObject/ro-crate-py#104.
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ResearchObject/workflow-run-crate
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1 issue opened.
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Join the working group (post here to be added) ResearchObject/workflow-run-crate#1, by @simleo.
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1 issue received 12 new comments.
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Join the working group (post here to be added) ResearchObject/workflow-run-crate#1 (12 comments by @dgarijo, @ieguinoa, @jmfernandez, @ljgarcia, @mr-c, @pauldg, @rsirvent, @RudoWittner, @simleo, @stain, @uniqueg)
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